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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_1014Conserved hypothetical protein. (122 aa)    
Predicted Functional Partners:
SGO_1015
Membrane protein, putative.
 
   
 0.947
SGO_1013
Glycosyltransferase involved in cell wall biogenesis; Identified by match to protein family HMM PF00535.
 
   
 0.946
SGO_1016
Putative glycosyltransferase; Identified by match to protein family HMM PF00535.
 
   
 0.937
SGO_1017
Membrane protein, putative.
 
     0.921
SGO_1018
Membrane protein, putative.
     
 0.527
rmlC
dTDP-4-keto-6-deoxyglucose-3,5-epimerase; Identified by match to protein family HMM PF00908.
 
     0.484
SGO_1019
Glycosyl transferase; Identified by match to protein family HMM PF00535.
     
 0.449
galE-1
UDP-glucose 4-epimerase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
       0.441
rfbB-1
dTDP-glucose 4,6-dehydratase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
     
 0.440
rgp
Glycosyltransferase; Identified by match to protein family HMM PF00535.
 
   
 0.420
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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