Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
SGO_1024Putative polysaccharide ABC transporter; Identified by match to protein family HMM PF00005. (407 aa)    
Predicted Functional Partners:
SGO_1023
Putative polysaccharide ABC transporter, permease protein; Identified by match to protein family HMM PF01061.
 
 
 0.999
SGO_1022
Rhamnosyltransferase; Identified by match to protein family HMM PF00535.
 
  
 0.992
SGO_1026
Rhamnosyltransferase; Identified by match to protein family HMM PF05045.
 
   
 0.978
rgpA
Rhamnosyltransferase, putative; Identified by match to protein family HMM PF09314.
  
 
 0.959
rgp
Glycosyltransferase; Identified by match to protein family HMM PF00535.
 
  
 0.955
SGO_1723
RgpG; Identified by match to protein family HMM PF00953.
 
  
 0.896
SGO_1027
Membrane protein, putative; Identified by match to protein family HMM PF00884.
     
 0.849
rfbD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
   
 0.758
SGO_1013
Glycosyltransferase involved in cell wall biogenesis; Identified by match to protein family HMM PF00535.
 
  
 0.730
SGO_1016
Putative glycosyltransferase; Identified by match to protein family HMM PF00535.
 
  
 0.712
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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