STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_1024Putative polysaccharide ABC transporter; Identified by match to protein family HMM PF00005. (407 aa)    
Predicted Functional Partners:
SGO_1023
Putative polysaccharide ABC transporter, permease protein; Identified by match to protein family HMM PF01061.
 
 
 0.999
SGO_1022
Rhamnosyltransferase; Identified by match to protein family HMM PF00535.
 
  
 0.965
SGO_1026
Rhamnosyltransferase; Identified by match to protein family HMM PF05045.
 
   
 0.913
rgp
Glycosyltransferase; Identified by match to protein family HMM PF00535.
 
  
 0.858
rgpA
Rhamnosyltransferase, putative; Identified by match to protein family HMM PF09314.
  
 
 0.843
SGO_1723
RgpG; Identified by match to protein family HMM PF00953.
 
  
 0.786
SGO_1027
Membrane protein, putative; Identified by match to protein family HMM PF00884.
     
 0.779
rfbD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
   
 0.608
SGO_1013
Glycosyltransferase involved in cell wall biogenesis; Identified by match to protein family HMM PF00535.
 
  
 0.587
SGO_1016
Putative glycosyltransferase; Identified by match to protein family HMM PF00535.
 
  
 0.560
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.