Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SGO_1085ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. (318 aa)    
Predicted Functional Partners:
SGO_1083
Sugar ABC transporter, ATP-binding protein SP0846; Identified by match to protein family HMM PF00005.
 
 0.999
SGO_1084
Sugar ABC transporter permease protein, putative; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
0.998
SGO_1082
Lipoprotein; Identified by match to protein family HMM PF02608.
 
 
 0.996
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
  
  
 0.754
pdp
Pyrimidine-nucleoside phosphorylase; Identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644.
     
 0.748
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.727
SGO_1078
Methyltransferase domain protein; MTS; identified by match to protein family HMM PF05175; Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyl-transferase C as well as other methyltransferases; pfam05175.
       0.629
coaA
Pantothenate kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00554.
       0.585
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
       0.555
SGO_1086
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.532
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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