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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_1114Protein of unknown function (DUF1149) superfamily; Identified by match to protein family HMM PF06619. (124 aa)    
Predicted Functional Partners:
SGO_1115
Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.
  
    0.803
fruA
PTS system, fructose specific IIABC components; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
       0.733
SGO_1925
Putative DNA binding protein; Identified by match to protein family HMM PF06279.
  
     0.732
SGO_0029
Conserved hypothetical protein; Identified by match to protein family HMM PF06257.
  
     0.712
SGO_1118
ABC transporter, ATP-binding protein SP1553; Identified by match to protein family HMM PF00005.
  
    0.711
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
       0.710
pcnA
Polynucleotide adenylyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.
       0.710
SGO_2136
Conserved hypothetical protein.
  
     0.655
SGO_0757
Peptidase, U32 family; Identified by match to protein family HMM PF01183.
  
     0.654
SGO_0438
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.647
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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