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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_1165Lipoprotein, putative; Identified by match to protein family HMM PF04302. (291 aa)    
Predicted Functional Partners:
SGO_1163
Iron permease FTR1 family; Identified by match to protein family HMM PF03239.
 
  
 0.994
SGO_1164
Tat translocated dye-type peroxidase family; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
 
  
 0.993
tatA
Twin-arginine translocation protein, Tat A/E family; Identified by match to protein family HMM PF02416.
 
    0.859
tatC
Sec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.
 
    0.850
SGO_1160
Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.
       0.574
SGO_1166
Voltage-gated chloride channel family protein; Identified by match to protein family HMM PF00654; match to protein family HMM PF02080.
       0.541
srtB
Identified by match to protein family HMM TIGR03064.
   
    0.459
SGO_1733
Membrane protein, putative; Identified by match to protein family HMM PF01061.
  
     0.442
SGO_0264
Conserved hypothetical protein.
  
     0.433
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.