STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_1306Transcriptional repressor MsmR; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532. (339 aa)    
Predicted Functional Partners:
SGO_1305
Substrate-binding protein MsmE; Identified by match to protein family HMM PF01547.
 
  
 0.873
purR
Galactose operon repressor GalR; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
  
   
 0.806
SGO_1302
Beta-fructofuranosidase/sucrose 6 phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.799
SGO_1304
Transmembrane permease MsmF; Identified by match to protein family HMM PF00528.
 
  
 0.792
SGO_1303
Transmembrane permease MsmG; Identified by match to protein family HMM PF00528.
 
  
 0.788
SGO_0505
PTS system, IIBC component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02003.
  
  
 0.743
SGO_1765
ABC transporter sugar binding protein; Identified by match to protein family HMM PF00528.
     
 0.722
SGO_1556
Phosphocarrier protein HPr; Identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003.
   
 
 0.717
SGO_0127
Phosphosugar-binding transcriptional regulator, RpiR family; Identified by match to protein family HMM PF01380; match to protein family HMM PF01418.
  
  
 0.693
SGO_0121
ABC transporter, permease protein SP1689; Identified by match to protein family HMM PF00528.
  
  
 0.648
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.