Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SGO_1328Conserved hypothetical protein; Identified by match to protein family HMM PF01643. (246 aa)    
Predicted Functional Partners:
SGO_1326
Conserved hypothetical protein; Identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906.
 
     0.900
SGO_1329
Oxygen-independent coproporphyrinogen III oxidase, putative; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.863
SGO_1327
HAD-superfamily subfamily IIA hydrolase, TIGR01457; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460.
       0.857
SGO_1325
CAAX amino terminal protease family; Identified by match to protein family HMM PF02517.
       0.815
SGO_1330
Transporter; Identified by match to protein family HMM PF00005.
  
    0.489
SGO_1331
HlyB/MsbA family ABC transporter; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
  
    0.489
fabD
Malonyl CoA-acyl carrier protein transacylase; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128.
  
  
 0.478
SGO_0738
Bacterial protein of unknown function (DUF948) family; Identified by match to protein family HMM PF06103.
 
     0.474
SGO_1324
Hypothetical protein; Identified by Glimmer2; putative.
       0.472
SGO_1332
Putative transcription regulator; Identified by match to protein family HMM PF00440.
       0.463
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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