close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rggBPutative transcriptional regulator RggB; Identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716. (287 aa)    
Predicted Functional Partners:
rggC
Putative transcriptional regulator RggC; Identified by match to protein family HMM TIGR01716.
  
  
 
0.929
rgg
Transcriptional regulator Rgg; Regulates the expression of glucosyltransferase (gtfG).
  
  
 
0.928
SGO_1358
ABC transporter ATP binding/permease protein; Identified by match to protein family HMM PF00005.
 
     0.567
SGO_0261
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
    0.536
SGO_0294
ABC transporter, putative; Identified by match to protein family HMM PF00005.
  
     0.423
SGO_0685
Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.
  
    0.404
SGO_1838
ABC transporter domain protein; Identified by match to protein family HMM PF00005.
  
     0.400
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.