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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_1427Conserved hypothetical protein; Identified by match to protein family HMM PF07997. (166 aa)    
Predicted Functional Partners:
SGO_1428
Hypothetical protein; Identified by Glimmer2; putative.
       0.800
SGO_0029
Conserved hypothetical protein; Identified by match to protein family HMM PF06257.
  
     0.642
SGO_0757
Peptidase, U32 family; Identified by match to protein family HMM PF01183.
  
   
 0.583
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
       0.579
SGO_0509
Replication initiation and membrane attachment protein (DnaB) superfamily; Identified by match to protein family HMM PF07261.
  
     0.565
SGO_1150
Conserved hypothetical protein.
  
     0.560
murN
MurN protein; Identified by match to protein family HMM PF02388.
  
     0.510
SGO_0261
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.467
SGO_0213
Conserved hypothetical protein.
  
     0.454
adcR
Repressor protein adcR; Identified by match to protein family HMM PF01022; match to protein family HMM PF01047.
  
     0.439
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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