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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_1482Amino acid permease family protein SP1001; Identified by match to protein family HMM PF00324. (465 aa)    
Predicted Functional Partners:
SGO_1075
Alpha-amylase precursor; Identified by match to protein family HMM PF00128.
   
 0.575
SGO_1351
Neopullulanase alpha amylase domain; Identified by match to protein family HMM PF00128; match to protein family HMM PF02903; Belongs to the glycosyl hydrolase 13 family.
   
 0.575
SGO_1652
Intracellular glycosyl hydrolase; Identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403.
   
 0.575
SGO_1483
ABC transporter, permease protein, probable SP0913; Identified by match to protein family HMM PF02687.
       0.507
SGO_1484
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.504
SGO_0383
Proton/sodium- glutamate symport protein; Identified by match to protein family HMM PF00375; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
  
 
 0.463
SGO_1481
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.445
SGO_1480
Ribosomal-protein-alanine acetyltransferase.
  
    0.439
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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