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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_1492Transcription regulator (TetR/AcrR family) BH0580, putative; Identified by match to protein family HMM PF00440. (188 aa)    
Predicted Functional Partners:
SGO_1287
Putative transcriptional regulator (TetR/AcrR family); Identified by match to protein family HMM PF00440.
  
     0.639
SGO_0828
Conserved hypothetical protein.
  
     0.542
SGO_1493
Conserved hypothetical protein.
       0.524
SGO_1349
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.465
SGO_1490
NrdI protein, putative; Identified by match to protein family HMM PF07972.
  
    0.451
SGO_0493
Transcriptional regulator, TetR family, putative; Identified by match to protein family HMM PF00440.
  
     0.439
SGO_1491
Hypothetical protein; Identified by Glimmer2; putative.
       0.436
SGO_2005
LPXTG cell wall surface protein; Identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167.
 
   
 0.435
cshA
Surface-associated protein CshA; Identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
  
    0.412
cshB
Surface-associated protein CshB; Identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
  
    0.412
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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