close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_1498ABC transporter, permease protein, probable SP0913. (663 aa)    
Predicted Functional Partners:
SGO_1499
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.980
SGO_1484
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.916
SGO_1504
Histidine kinase; Identified by match to protein family HMM PF02518.
 
   
 0.857
SGO_1505
Response regulator Rr1; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
     0.825
SGO_1500
Hypothetical protein; Identified by Glimmer2; putative.
       0.768
SGO_0750
Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730.
  
 
 0.664
SGO_1420
ATP-binding cassette transporter-like protein.
  
 
 0.664
SGO_0944
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.597
SGO_2005
LPXTG cell wall surface protein; Identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167.
  
 
 0.574
SGO_0751
ABC transporter, ATP-binding protein SP0786; Identified by match to protein family HMM PF00005.
  
 
 0.563
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
Server load: low (32%) [HD]