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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_1506Membrane protein, putative. (419 aa)    
Predicted Functional Partners:
scaA
ABC transporter membrane-spanning permease - manganese transport; Identified by match to protein family HMM PF00950.
   
  
 0.648
SGO_1504
Histidine kinase; Identified by match to protein family HMM PF02518.
   
 
 0.533
troB
Manganese ABC transporter, ATP-binding protein SP1648; Identified by match to protein family HMM PF00005.
   
  
 0.524
SGO_1507
Conserved hypothetical protein.
       0.506
SGO_1505
Response regulator Rr1; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
     
 0.496
SGO_1802
Metal ABC transporter substrate-binding lipoprotein precursor; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.
   
  
 0.448
SGO_1934
Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
 
 0.437
adcB
ABC transporter permease, Mn; Identified by match to protein family HMM PF00950.
   
  
 0.419
SGO_1503
Hypothetical protein; Identified by Glimmer2; putative.
       0.408
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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