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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_1646Membrane protein, putative; Identified by match to protein family HMM PF06271. (190 aa)    
Predicted Functional Partners:
SGO_1647
Transcription antiterminator BglG family; Identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279.
 
     0.935
SGO_1642
Conserved hypothetical protein.
 
     0.782
SGO_1644
PTS system, cellobiose-specific IIB component, putative; Identified by match to protein family HMM PF02302.
 
     0.753
SGO_1645
PTS cellobiose-specific enzyme IIA, putative; Identified by match to protein family HMM PF02255.
 
     0.670
SGO_1643
PTS system, cellobiose-specific IIC component, putative; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
     0.643
SGO_2139
S4 RNA-binding domain protein; Identified by match to protein family HMM PF01479.
  
    0.459
SGO_1641
Bacterial protein of unknown function (DUF871); Identified by match to protein family HMM PF05913.
 
     0.445
ppx1
Inorganic pyrophosphatase, manganese-dependent; Identified by match to protein family HMM PF01368; match to protein family HMM PF02833; Belongs to the PPase class C family.
       0.417
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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