STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiFOligopeptide transport ATP-binding protein amiF; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; Belongs to the ABC transporter superfamily. (307 aa)    
Predicted Functional Partners:
amiD
Oligopeptide transport system permease protein; Identified by match to protein family HMM PF00528.
 
 0.998
hppB
Oligopeptide transport system permease; Identified by match to protein family HMM PF00528.
 
 
 0.998
amiE
Oligopeptide transport ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
0.997
hppA
Oligopeptide-binding lipoprotein; May be involved in the expression of cell surface properties important for colonization of the human oral cavity. It may also be involved in uptake processes; Belongs to the bacterial solute-binding protein 5 family.
 
 
 0.991
hppG
Oligopeptide-binding lipoprotein; Identified by match to protein family HMM PF00496.
 
 
 0.986
hppH
Oligopeptide-binding lipoprotein; Identified by match to protein family HMM PF00496.
 
 
 0.980
SGO_1716
Oligopeptide binding protein; Identified by match to protein family HMM PF00496.
 
 
 0.980
ecfT
ABC-type putative cobalt transport system, permease; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.663
SGO_0466
Membrane protein, putative; Identified by match to protein family HMM PF02361.
  
 
 0.663
SGO_0489
Identified by match to protein family HMM PF02361.
 
 
 0.663
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.