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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_1731DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281. (199 aa)    
Predicted Functional Partners:
SGO_1732
Histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.
 0.998
SGO_1733
Membrane protein, putative; Identified by match to protein family HMM PF01061.
 
  
 0.941
SGO_0602
Histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.
 
 
 0.894
SGO_1896
Sensory transduction histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.
 
 0.894
SGO_1734
ABC transporter, ATP-binding protein SP2003; Identified by match to protein family HMM PF00005.
    0.879
sun
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.469
SGO_1735
Conserved domain protein; Identified by match to protein family HMM PF02734.
       0.457
SGO_1736
Alkaline shock protein; Identified by match to protein family HMM PF03780.
       0.457
SGO_0600
Serine/threonine protein kinase; Identified by match to protein family HMM PF00069; match to protein family HMM PF03793.
     
 0.432
SGO_1730
SPFH domain/Band 7 family; Identified by match to protein family HMM PF01145.
       0.409
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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