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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_1733Membrane protein, putative; Identified by match to protein family HMM PF01061. (244 aa)    
Predicted Functional Partners:
SGO_1734
ABC transporter, ATP-binding protein SP2003; Identified by match to protein family HMM PF00005.
 
  
 0.952
SGO_1731
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281.
 
  
 0.941
SGO_1732
Histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.
 
  
 0.934
SGO_0511
NADPH-flavin oxidoreductase -like protein; Identified by match to protein family HMM PF00881; Belongs to the flavin oxidoreductase frp family.
  
  
 0.484
SGO_0835
Nitroreductase; Identified by match to protein family HMM PF00881.
  
  
 0.484
SGO_1735
Conserved domain protein; Identified by match to protein family HMM PF02734.
       0.482
SGO_1736
Alkaline shock protein; Identified by match to protein family HMM PF03780.
       0.482
SGO_1164
Tat translocated dye-type peroxidase family; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
  
     0.449
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
 
    0.449
SGO_1165
Lipoprotein, putative; Identified by match to protein family HMM PF04302.
  
     0.442
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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