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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_1735Conserved domain protein; Identified by match to protein family HMM PF02734. (554 aa)    
Predicted Functional Partners:
SGO_0700
Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.
   0.993
SGO_1736
Alkaline shock protein; Identified by match to protein family HMM PF03780.
 
  
 0.984
SGO_1115
Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.
   0.979
degV
DegV family fatty acid binding protein; Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.
   0.958
SGO_0979
Identified by match to protein family HMM PF02645.
 
   0.879
rpmB
Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
       0.525
SGO_1862
Alkaline shock protein; Identified by match to protein family HMM PF03780.
 
  
 0.502
SGO_1732
Histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.
       0.482
SGO_1733
Membrane protein, putative; Identified by match to protein family HMM PF01061.
       0.482
birA
BirA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.478
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.