Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SGO_1763ABC transporter, substrate-binding protein SP0092; Identified by match to protein family HMM PF01547. (486 aa)    
Predicted Functional Partners:
SGO_1764
ABC transporter, permease protein SP0091; Identified by match to protein family HMM PF00528.
 
 0.998
SGO_1765
ABC transporter sugar binding protein; Identified by match to protein family HMM PF00528.
 
 
 0.993
SGO_1762
Protein of unknown function, DUF624 family; Identified by match to protein family HMM PF04854.
 
  
 0.925
SGO_1768
Glycosyl hydrolase, family 38; Identified by match to protein family HMM PF01074; match to protein family HMM PF07748.
 
   
 0.904
SGO_1769
Protein of unknown function (DUF1237) superfamily; Identified by match to protein family HMM PF06824.
 
   
 0.890
SGO_1770
Glycosyl hydrolase; Identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180.
 
   
 0.881
SGO_1760
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165.
 
   
 0.878
SGO_1761
Histidine kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580.
 
  
 0.865
SGO_1766
Glycosyl hydrolase family 20, catalytic domain family; Identified by match to protein family HMM PF00728.
 
   
 0.837
SGO_0352
ABC transporter, ATP-binding protein SP1580; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.
  
 
 0.797
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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