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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_1771Conserved hypothetical protein; Identified by match to protein family HMM PF00754. (566 aa)    
Predicted Functional Partners:
fucA1
alpha-L-fucosidase; Identified by match to protein family HMM PF01120.
 
  
 
0.927
SGO_1486
Beta-galactosidase; Identified by match to protein family HMM PF00703; match to protein family HMM PF00746; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM PF07532; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
 
   
 0.855
SGO_0043
Beta-galactosidase; Identified by match to protein family HMM PF01301; match to protein family HMM PF02449; Belongs to the glycosyl hydrolase 35 family.
 
 0.768
SGO_1770
Glycosyl hydrolase; Identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180.
 
     0.709
SGO_1769
Protein of unknown function (DUF1237) superfamily; Identified by match to protein family HMM PF06824.
 
     0.651
cutC
Copper homeostasis protein CutC; Participates in the control of copper homeostasis. Belongs to the CutC family.
 
   
 0.571
SGO_0119
Conserved hypothetical protein subfamily; Identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022.
 
     0.466
SGO_1772
Integral membrane protein; Identified by match to protein family HMM PF01988.
       0.460
SGO_0405
Beta-N-acetylhexosaminidase precursor; Identified by match to protein family HMM PF00728; match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
 
  
 0.458
SGO_0208
LPXTG cell wall surface protein, glycosyl hydrolase family; Identified by match to protein family HMM PF00746; match to protein family HMM PF03644; match to protein family HMM PF04650; match to protein family HMM PF07523; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
  
   
 0.406
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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