Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
drraABC transporter-like protein CylA; Identified by match to protein family HMM PF00005. (309 aa)    
Predicted Functional Partners:
SGO_1796
ABC transporter-like protein CylB.
 
    0.954
SGO_1497
ABC-type transporter, ATPase component; Identified by match to protein family HMM PF00005.
  
  
 
0.915
SGO_1877
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    
0.845
SGO_1496
Putative ABC transporter, integral membrane protein; Identified by match to protein family HMM PF01061.
 
    0.797
SGO_1911
ABC-type transporter, ATPase component; Identified by match to protein family HMM PF00005.
 
    
0.680
SGO_1494
Conserved hypothetical protein.
  
     0.605
SGO_1495
Putative transcriptional regulator; Identified by match to protein family HMM PF04397.
  
     0.595
SGO_1798
Transcriptional regulator, Cro/CI family; Identified by match to protein family HMM PF01381.
       0.482
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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