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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
drraABC transporter-like protein CylA; Identified by match to protein family HMM PF00005. (309 aa)    
Predicted Functional Partners:
SGO_1796
ABC transporter-like protein CylB.
 
    0.952
SGO_1497
ABC-type transporter, ATPase component; Identified by match to protein family HMM PF00005.
  
  
 
0.915
SGO_1877
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    
0.846
SGO_1496
Putative ABC transporter, integral membrane protein; Identified by match to protein family HMM PF01061.
 
    0.786
SGO_1911
ABC-type transporter, ATPase component; Identified by match to protein family HMM PF00005.
 
    
0.681
SGO_1494
Conserved hypothetical protein.
  
     0.605
SGO_1495
Putative transcriptional regulator; Identified by match to protein family HMM PF04397.
  
    0.597
SGO_1798
Transcriptional regulator, Cro/CI family; Identified by match to protein family HMM PF01381.
       0.482
atpG
ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
   0.443
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.435
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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