STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_1878Transcriptional regulator, TetR family domain protein; Identified by match to protein family HMM PF00440. (204 aa)    
Predicted Functional Partners:
SGO_0493
Transcriptional regulator, TetR family, putative; Identified by match to protein family HMM PF00440.
  
     0.762
SGO_1876
Uncharacterized membrane protein, putative.
 
     0.717
SGO_1877
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     0.564
SGO_1287
Putative transcriptional regulator (TetR/AcrR family); Identified by match to protein family HMM PF00440.
  
     0.554
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.536
SGO_1874
Hypothetical protein; Identified by Glimmer2; putative.
       0.485
SGO_0492
Identified by match to protein family HMM PF07690.
  
     0.462
ssb-1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
       0.460
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.441
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.