Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rbsBRibose ABC transporter (ribose-binding component) CAC1453; Identified by match to protein family HMM PF00532. (317 aa)    
Predicted Functional Partners:
SGO_1894
Sugar-binding cell envelope protein; Identified by match to protein family HMM PF01547.
 
  
 0.966
SGO_1896
Sensory transduction histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.
 
    0.962
SGO_1895
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
  
 0.952
SGO_1891
PTS system, IIC component; Identified by match to protein family HMM PF03609.
 
     0.873
SGO_1892
PTS system, fructose(mannose)-specific IIB; Identified by match to protein family HMM PF03830.
 
   
 0.866
SGO_1893
PTS system, fructose(mannose)-specific IIA component; Identified by match to protein family HMM PF03610.
 
   
 0.843
SGO_1889
Conserved hypothetical protein.
 
     0.839
SGO_1890
PTS system, fructose(mannose)-specific IID; Identified by match to protein family HMM PF03613.
 
     0.834
SGO_1174
Histidine kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF02743; match to protein family HMM PF06580.
  
 
 0.801
SGO_1761
Histidine kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580.
  
 
 0.741
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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