STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SGO_1908DNA response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (232 aa)    
Predicted Functional Partners:
SGO_1907
Sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
 
 0.996
SGO_1180
Histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
 
 0.832
SGO_1073
Sensor protein CiaH; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
 
 
 0.819
SGO_0780
Histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 
 0.797
SGO_1911
ABC-type transporter, ATPase component; Identified by match to protein family HMM PF00005.
  
  
 0.785
SGO_1910
Membrane protein, putative.
       0.780
SGO_1909
Membrane protein, putative.
       0.777
SGO_1416
Putative histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
 
 0.774
SGO_0299
Putative histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
 
 
 0.772
SGO_1175
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165.
  
   
 0.683
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.