STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_1920Conserved hypothetical protein. (97 aa)    
Predicted Functional Partners:
comYA
Competence protein comYA; Identified by match to protein family HMM PF00437.
  
 
 0.980
comYB
Identified by match to protein family HMM PF00482.
  
  
 0.979
comYC
ComYC competence protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
  
 0.976
SGO_1919
ComYD-like protein.
  
  
 0.960
SGO_1918
Conserved hypothetical protein.
     
 0.804
comYD
ComYD.
       0.800
SGO_1917
Conserved hypothetical protein.
       0.717
celB
DNA internalization-related competence protein celB; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
  
  
 0.705
comFA
Competence ComFA-like protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.
   
  
 0.675
SGO_0664
Type 4 prepilin peptidase; Identified by match to protein family HMM PF01478; match to protein family HMM PF06750.
  
  
 0.646
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.