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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_2005LPXTG cell wall surface protein; Identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167. (3646 aa)    
Predicted Functional Partners:
comB
Transport protein ComB; Identified by match to protein family HMM TIGR01000.
  
 
 0.917
SGO_2004
LPXTG cell wall surface protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF07501; match to protein family HMM TIGR01167.
 
   
 0.894
SGO_0750
Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730.
  
 
 0.799
SGO_1420
ATP-binding cassette transporter-like protein.
  
 
 0.799
cshA
Surface-associated protein CshA; Identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
 
  
 0.793
cshB
Surface-associated protein CshB; Identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
 
  
 0.793
SGO_0107
LPXTG cell wall surface protein, collagen binding domain; Identified by match to protein family HMM PF00746; match to protein family HMM PF05737; match to protein family HMM TIGR01167.
 
  
 0.783
SGO_1615
CAAX amino terminal protease family; Identified by match to protein family HMM PF02517.
  
     0.774
SGO_0144
Conserved hypothetical protein.
  
     0.773
SGO_0828
Conserved hypothetical protein.
  
     0.773
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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