SGO_2022 protein (Streptococcus gordonii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SGO_2022

UDP-glucose 4-epimerase BH3715; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993. (288 aa)

Predicted Functional Partners:

SGO_2023

0.989

SGO_2024

0.936

SGO_2020

0.805

wze

0.801

rpsL

0.781

wzd

0.778

rpsN

0.775

rpsS

0.774

rpsC

0.771

rplN

0.770

Your Current Organism:

Streptococcus gordonii

NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SGO_2020	SGO_2022	SGO_2020	SGO_2022	Glycosyltransferase; Identified by match to protein family HMM PF00535.	UDP-glucose 4-epimerase BH3715; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.	0.805
SGO_2020	SGO_2023	SGO_2020	SGO_2023	Glycosyltransferase; Identified by match to protein family HMM PF00535.	Galactosyltransferase; Identified by match to protein family HMM PF02397.	0.820
SGO_2020	SGO_2024	SGO_2020	SGO_2024	Glycosyltransferase; Identified by match to protein family HMM PF00535.	Extracellular polysaccharide biosynthesis; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.	0.771
SGO_2020	wzd	SGO_2020	SGO_2026	Glycosyltransferase; Identified by match to protein family HMM PF00535.	Polysaccharide export protein, MPA1 family; Identified by match to protein family HMM PF02706.	0.747
SGO_2020	wze	SGO_2020	SGO_2025	Glycosyltransferase; Identified by match to protein family HMM PF00535.	Putative autophosphorylating protein tyrosine kinase; Identified by match to protein family HMM TIGR01007.	0.773
SGO_2022	SGO_2020	SGO_2022	SGO_2020	UDP-glucose 4-epimerase BH3715; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.	Glycosyltransferase; Identified by match to protein family HMM PF00535.	0.805
SGO_2022	SGO_2023	SGO_2022	SGO_2023	UDP-glucose 4-epimerase BH3715; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.	Galactosyltransferase; Identified by match to protein family HMM PF02397.	0.989
SGO_2022	SGO_2024	SGO_2022	SGO_2024	UDP-glucose 4-epimerase BH3715; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.	Extracellular polysaccharide biosynthesis; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.	0.936
SGO_2022	rplN	SGO_2022	SGO_1975	UDP-glucose 4-epimerase BH3715; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.	Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.770
SGO_2022	rpsC	SGO_2022	SGO_1979	UDP-glucose 4-epimerase BH3715; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.771
SGO_2022	rpsL	SGO_2022	SGO_0204	UDP-glucose 4-epimerase BH3715; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.781
SGO_2022	rpsN	SGO_2022	SGO_1972	UDP-glucose 4-epimerase BH3715; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.	Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	0.775
SGO_2022	rpsS	SGO_2022	SGO_1981	UDP-glucose 4-epimerase BH3715; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.774
SGO_2022	wzd	SGO_2022	SGO_2026	UDP-glucose 4-epimerase BH3715; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.	Polysaccharide export protein, MPA1 family; Identified by match to protein family HMM PF02706.	0.778
SGO_2022	wze	SGO_2022	SGO_2025	UDP-glucose 4-epimerase BH3715; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.	Putative autophosphorylating protein tyrosine kinase; Identified by match to protein family HMM TIGR01007.	0.801
SGO_2023	SGO_2020	SGO_2023	SGO_2020	Galactosyltransferase; Identified by match to protein family HMM PF02397.	Glycosyltransferase; Identified by match to protein family HMM PF00535.	0.820
SGO_2023	SGO_2022	SGO_2023	SGO_2022	Galactosyltransferase; Identified by match to protein family HMM PF02397.	UDP-glucose 4-epimerase BH3715; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.	0.989
SGO_2023	SGO_2024	SGO_2023	SGO_2024	Galactosyltransferase; Identified by match to protein family HMM PF02397.	Extracellular polysaccharide biosynthesis; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.	0.957
SGO_2023	wzd	SGO_2023	SGO_2026	Galactosyltransferase; Identified by match to protein family HMM PF02397.	Polysaccharide export protein, MPA1 family; Identified by match to protein family HMM PF02706.	0.928
SGO_2023	wze	SGO_2023	SGO_2025	Galactosyltransferase; Identified by match to protein family HMM PF02397.	Putative autophosphorylating protein tyrosine kinase; Identified by match to protein family HMM TIGR01007.	0.947

page 1 of 3

Server load: low (32%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About