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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comXComX. (52 aa)    
Predicted Functional Partners:
comE
Competence response regulator ComE; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
      
 0.649
ComR1
Competence specific sigma factor ComR1.
      
 0.646
comC
Competence factor-related protein ComC; Identified by match to protein family HMM PF03047; match to protein family HMM TIGR01847.
      
 0.625
SGO_1575
Competence protein CoiA; Identified by match to protein family HMM PF06054.
      
 0.623
comB
Transport protein ComB; Identified by match to protein family HMM TIGR01000.
      
 0.580
comD
Histidine protein kinase ComD; Identified by match to protein family HMM PF02518.
      
 0.578
comYA
Competence protein comYA; Identified by match to protein family HMM PF00437.
      
 0.573
spxB
Pyruvate oxidase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR02720; Belongs to the TPP enzyme family.
      
 0.571
rgg
Transcriptional regulator Rgg; Regulates the expression of glucosyltransferase (gtfG).
      
 0.571
sgc
Serine protease challisin; Identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF04650; match to protein family HMM PF06280; match to protein family HMM PF07554; match to protein family HMM TIGR01168.
      
 0.571
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.