comA protein (Streptococcus gordonii) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

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protein homology

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Score

comA

ATP-binding Transport protein ComA; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193. (717 aa)

Predicted Functional Partners:

comB

0.992

SGO_1066

0.658

SGO_0165

0.618

SGO_0166

0.611

SGO_1358

0.602

SGO_1838

0.595

SGO_0962

0.589

SGO_2005

0.582

cydC

0.577

SGO_0961

0.568

Your Current Organism:

Streptococcus gordonii

NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SGO_0165	SGO_0166	SGO_0165	SGO_0166	ABC transporter, permease/ATP-binding protein SP2075; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, permease/ATP-binding protein SP2073; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.988
SGO_0165	SGO_0961	SGO_0165	SGO_0961	ABC transporter, permease/ATP-binding protein SP2075; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.466
SGO_0165	SGO_0962	SGO_0165	SGO_0962	ABC transporter, permease/ATP-binding protein SP2075; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.481
SGO_0165	SGO_1358	SGO_0165	SGO_1358	ABC transporter, permease/ATP-binding protein SP2075; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter ATP binding/permease protein; Identified by match to protein family HMM PF00005.	0.438
SGO_0165	SGO_1838	SGO_0165	SGO_1838	ABC transporter, permease/ATP-binding protein SP2075; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter domain protein; Identified by match to protein family HMM PF00005.	0.510
SGO_0165	comA	SGO_0165	SGO_2097	ABC transporter, permease/ATP-binding protein SP2075; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ATP-binding Transport protein ComA; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193.	0.618
SGO_0165	cydC	SGO_0165	SGO_0464	ABC transporter, permease/ATP-binding protein SP2075; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Putative ABC transporter (ATP-binding protein); Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.491
SGO_0166	SGO_0165	SGO_0166	SGO_0165	ABC transporter, permease/ATP-binding protein SP2073; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, permease/ATP-binding protein SP2075; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.988
SGO_0166	comA	SGO_0166	SGO_2097	ABC transporter, permease/ATP-binding protein SP2073; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ATP-binding Transport protein ComA; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193.	0.611
SGO_0961	SGO_0165	SGO_0961	SGO_0165	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, permease/ATP-binding protein SP2075; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.466
SGO_0961	SGO_0962	SGO_0961	SGO_0962	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.983
SGO_0961	comA	SGO_0961	SGO_2097	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ATP-binding Transport protein ComA; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193.	0.568
SGO_0962	SGO_0165	SGO_0962	SGO_0165	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, permease/ATP-binding protein SP2075; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.481
SGO_0962	SGO_0961	SGO_0962	SGO_0961	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.983
SGO_0962	comA	SGO_0962	SGO_2097	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ATP-binding Transport protein ComA; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193.	0.589
SGO_1066	comA	SGO_1066	SGO_2097	Hypothetical protein; Identified by Glimmer2; putative.	ATP-binding Transport protein ComA; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193.	0.658
SGO_1066	comB	SGO_1066	SGO_2096	Hypothetical protein; Identified by Glimmer2; putative.	Transport protein ComB; Identified by match to protein family HMM TIGR01000.	0.419
SGO_1358	SGO_0165	SGO_1358	SGO_0165	ABC transporter ATP binding/permease protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease/ATP-binding protein SP2075; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.438
SGO_1358	comA	SGO_1358	SGO_2097	ABC transporter ATP binding/permease protein; Identified by match to protein family HMM PF00005.	ATP-binding Transport protein ComA; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193.	0.602
SGO_1838	SGO_0165	SGO_1838	SGO_0165	ABC transporter domain protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease/ATP-binding protein SP2075; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.510

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