SGO_2139 protein (Streptococcus gordonii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SGO_2139

S4 RNA-binding domain protein; Identified by match to protein family HMM PF01479. (88 aa)

Predicted Functional Partners:

fbpA

0.938

rplS

0.890

SGO_2138

0.869

rpmB

0.842

rplQ

0.841

rpmH

0.837

rplT

0.830

rplB

0.829

rpmA

0.827

rplM

0.825

Your Current Organism:

Streptococcus gordonii

NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SGO_2138	SGO_2139	SGO_2138	SGO_2139	Septum formation initiator family; Identified by match to protein family HMM PF04977.	S4 RNA-binding domain protein; Identified by match to protein family HMM PF01479.	0.869
SGO_2139	SGO_2138	SGO_2139	SGO_2138	S4 RNA-binding domain protein; Identified by match to protein family HMM PF01479.	Septum formation initiator family; Identified by match to protein family HMM PF04977.	0.869
SGO_2139	fbpA	SGO_2139	SGO_0855	S4 RNA-binding domain protein; Identified by match to protein family HMM PF01479.	Identified by match to protein family HMM PF05670; match to protein family HMM PF05833.	0.938
SGO_2139	rplB	SGO_2139	SGO_1982	S4 RNA-binding domain protein; Identified by match to protein family HMM PF01479.	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.829
SGO_2139	rplM	SGO_2139	SGO_0358	S4 RNA-binding domain protein; Identified by match to protein family HMM PF01479.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.825
SGO_2139	rplQ	SGO_2139	SGO_1958	S4 RNA-binding domain protein; Identified by match to protein family HMM PF01479.	Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059.	0.841
SGO_2139	rplS	SGO_2139	SGO_1383	S4 RNA-binding domain protein; Identified by match to protein family HMM PF01479.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.890
SGO_2139	rplT	SGO_2139	SGO_1034	S4 RNA-binding domain protein; Identified by match to protein family HMM PF01479.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.830
SGO_2139	rpmA	SGO_2139	SGO_0820	S4 RNA-binding domain protein; Identified by match to protein family HMM PF01479.	Ribosomal protein L27; Identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family.	0.827
SGO_2139	rpmB	SGO_2139	SGO_1737	S4 RNA-binding domain protein; Identified by match to protein family HMM PF01479.	Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	0.842
SGO_2139	rpmH	SGO_2139	SGO_0183	S4 RNA-binding domain protein; Identified by match to protein family HMM PF01479.	Ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family.	0.837
fbpA	SGO_2139	SGO_0855	SGO_2139	Identified by match to protein family HMM PF05670; match to protein family HMM PF05833.	S4 RNA-binding domain protein; Identified by match to protein family HMM PF01479.	0.938
fbpA	rplB	SGO_0855	SGO_1982	Identified by match to protein family HMM PF05670; match to protein family HMM PF05833.	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.884
fbpA	rplM	SGO_0855	SGO_0358	Identified by match to protein family HMM PF05670; match to protein family HMM PF05833.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.883
fbpA	rplQ	SGO_0855	SGO_1958	Identified by match to protein family HMM PF05670; match to protein family HMM PF05833.	Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059.	0.406
fbpA	rplS	SGO_0855	SGO_1383	Identified by match to protein family HMM PF05670; match to protein family HMM PF05833.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.705
fbpA	rplT	SGO_0855	SGO_1034	Identified by match to protein family HMM PF05670; match to protein family HMM PF05833.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.705
fbpA	rpmA	SGO_0855	SGO_0820	Identified by match to protein family HMM PF05670; match to protein family HMM PF05833.	Ribosomal protein L27; Identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family.	0.705
fbpA	rpmB	SGO_0855	SGO_1737	Identified by match to protein family HMM PF05670; match to protein family HMM PF05833.	Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	0.705
fbpA	rpmH	SGO_0855	SGO_0183	Identified by match to protein family HMM PF05670; match to protein family HMM PF05833.	Ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family.	0.705

page 1 of 5

Server load: low (34%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About