STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF83755.1Type IX secretion system membrane protein, PorP/SprF family. (1015 aa)    
Predicted Functional Partners:
SHF83782.1
Gliding motility-associated C-terminal domain-containing protein.
 
  
 0.968
SHF83810.1
Hypothetical protein.
 
    0.894
SHF83725.1
Gliding motility-associated C-terminal domain-containing protein.
 
  
  0.889
SHF83700.1
Type IX secretion system membrane protein, PorP/SprF family.
 
     0.862
SHF83836.1
Hypothetical protein.
 
     0.858
SHG00828.1
Protein of unknown function.
  
     0.738
SHG47743.1
Predicted lipoprotein.
  
     0.737
SHG00800.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.705
SHF91048.1
Hypothetical protein.
  
     0.697
SHG59361.1
PPIC-type PPIASE domain-containing protein.
  
     0.671
Your Current Organism:
Flavobacterium fluvii
NCBI taxonomy Id: 468056
Other names: DSM 19978, F. fluvii, Flavobacterium fluvii Lee et al. 2010, Flavobacterium sp. H7, KACC 12818, strain H7
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