STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG60259.1Transcriptional regulator, TetR family. (196 aa)    
Predicted Functional Partners:
SHG60298.1
Hypothetical protein.
       0.765
SHG60331.1
Predicted arabinose efflux permease, MFS family.
 
     0.744
SHG44023.1
Phytanoyl-CoA dioxygenase (PhyH).
  
   
 0.696
SHG90499.1
Iron complex outermembrane recepter protein.
  
     0.566
SHG90535.1
Starch-binding associating with outer membrane.
  
     0.559
SHG60231.1
PH domain-containing protein.
       0.468
SHG42063.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
  
     0.460
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.438
SHG43889.1
Protein of unknown function.
  
     0.434
SHG09707.1
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain.
  
     0.419
Your Current Organism:
Flavobacterium fluvii
NCBI taxonomy Id: 468056
Other names: DSM 19978, F. fluvii, Flavobacterium fluvii Lee et al. 2010, Flavobacterium sp. H7, KACC 12818, strain H7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.