STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG96050.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (222 aa)    
Predicted Functional Partners:
SHG96013.1
Hypothetical protein.
 
  0.976
SHF69211.1
His Kinase A (phospho-acceptor) domain-containing protein.
   
 0.969
SHG52633.1
PAS domain S-box-containing protein.
   
 0.969
SHG72152.1
PAS domain S-box-containing protein.
   
 0.969
SHG66273.1
PAS domain S-box-containing protein.
  
 0.816
SHF91344.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
  
 0.779
SHG84344.1
PAS domain S-box-containing protein.
   
 0.725
SHG53177.1
Two component regulator propeller.
  
 0.662
SHG88350.1
PAS domain S-box-containing protein.
   
 0.647
SHG13217.1
Signal transduction histidine kinase.
  
 0.639
Your Current Organism:
Flavobacterium fluvii
NCBI taxonomy Id: 468056
Other names: DSM 19978, F. fluvii, Flavobacterium fluvii Lee et al. 2010, Flavobacterium sp. H7, KACC 12818, strain H7
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