STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000422945_00645Unannotated protein. (701 aa)    
Predicted Functional Partners:
GCA_000422945_01210
Unannotated protein.
  
  
 0.841
GCA_000422945_00646
Unannotated protein.
       0.825
GCA_000422945_00647
Unannotated protein.
       0.825
GCA_000422945_01315
Unannotated protein.
  
 
 0.787
GCA_000422945_00471
Unannotated protein.
  
 
 0.762
GCA_000422945_00648
Unannotated protein.
       0.732
GCA_000422945_00868
Unannotated protein.
   
 
 0.705
GCA_000422945_01927
Unannotated protein.
   
 
 0.705
GCA_000422945_02574
Unannotated protein.
   
 
 0.705
GCA_000422945_02358
Unannotated protein.
  
  
 0.690
Your Current Organism:
Pedobacter oryzae
NCBI taxonomy Id: 468059
Other names: P. oryzae DSM 19973, Pedobacter oryzae DSM 19973, Pedobacter sp. N7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.