FGIG_11384 protein (Fasciola gigantica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FGIG_11384

Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (203 aa)

Predicted Functional Partners:

FGIG_12205

0.971

FGIG_04038

0.962

FGIG_08965

0.960

FGIG_08555

0.959

FGIG_10690

0.955

FGIG_00519

0.952

FGIG_03686

0.931

FGIG_08268

0.910

FGIG_03671

0.910

FGIG_02681

0.896

Your Current Organism:

Fasciola gigantica

NCBI taxonomy Id: 46835
Other names: F. gigantica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FGIG_00519	FGIG_02681	A0A504Z7F0	A0A504YV63	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	2'-O-ribose RNA methyltransferase SPB1.	0.997
FGIG_00519	FGIG_04038	A0A504Z7F0	A0A504Y5S1	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	RNA-binding protein 28.	0.987
FGIG_00519	FGIG_08555	A0A504Z7F0	A0A504YVK0	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	RRM domain-containing protein.	0.997
FGIG_00519	FGIG_08965	A0A504Z7F0	A0A504YEX6	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.734
FGIG_00519	FGIG_10690	A0A504Z7F0	A0A504YBK2	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Uncharacterized protein.	0.971
FGIG_00519	FGIG_11384	A0A504Z7F0	A0A504Y4J0	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.	0.952
FGIG_00519	FGIG_12205	A0A504Z7F0	A0A504YB50	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Ribosomal biogenesis protein.	0.999
FGIG_02681	FGIG_00519	A0A504YV63	A0A504Z7F0	2'-O-ribose RNA methyltransferase SPB1.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.997
FGIG_02681	FGIG_04038	A0A504YV63	A0A504Y5S1	2'-O-ribose RNA methyltransferase SPB1.	RNA-binding protein 28.	0.976
FGIG_02681	FGIG_08555	A0A504YV63	A0A504YVK0	2'-O-ribose RNA methyltransferase SPB1.	RRM domain-containing protein.	0.993
FGIG_02681	FGIG_08965	A0A504YV63	A0A504YEX6	2'-O-ribose RNA methyltransferase SPB1.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.784
FGIG_02681	FGIG_10690	A0A504YV63	A0A504YBK2	2'-O-ribose RNA methyltransferase SPB1.	Uncharacterized protein.	0.970
FGIG_02681	FGIG_11384	A0A504YV63	A0A504Y4J0	2'-O-ribose RNA methyltransferase SPB1.	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.	0.896
FGIG_02681	FGIG_12205	A0A504YV63	A0A504YB50	2'-O-ribose RNA methyltransferase SPB1.	Ribosomal biogenesis protein.	0.988
FGIG_03671	FGIG_03686	A0A504YY69	A0A504Z8R2	Importin subunit alpha; Belongs to the importin alpha family.	Importin subunit beta.	0.986
FGIG_03671	FGIG_11384	A0A504YY69	A0A504Y4J0	Importin subunit alpha; Belongs to the importin alpha family.	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.	0.910
FGIG_03686	FGIG_03671	A0A504Z8R2	A0A504YY69	Importin subunit beta.	Importin subunit alpha; Belongs to the importin alpha family.	0.986
FGIG_03686	FGIG_08268	A0A504Z8R2	A0A504YRN3	Importin subunit beta.	Importin subunit alpha; Belongs to the importin alpha family.	0.986
FGIG_03686	FGIG_11384	A0A504Z8R2	A0A504Y4J0	Importin subunit beta.	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.	0.931
FGIG_04038	FGIG_00519	A0A504Y5S1	A0A504Z7F0	RNA-binding protein 28.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.987