STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FGIG_05265LIM/homeobox protein Lhx1. (1205 aa)    
Predicted Functional Partners:
FGIG_04340
Cyclin-K; Belongs to the cyclin family.
    
   0.931
FGIG_09015
LIM domain-binding protein 2.
    
 0.775
FGIG_09014
LIM domain-binding protein 2.
    
 0.730
FGIG_07749
Paired domain transcription factor.
   
 
 0.711
FGIG_04952
Transcription factor E2-alpha.
    
 0.644
FGIG_04747
GATA-type domain-containing protein.
    
 0.639
FGIG_02448
GATA-binding factor A.
    
 0.639
FGIG_01211
Serum response factor.
    
 0.629
FGIG_07345
Lhx4 protein.
   
0.603
FGIG_01246
Pancreas transcription factor 1 subunit alpha.
    
 0.599
Your Current Organism:
Fasciola gigantica
NCBI taxonomy Id: 46835
Other names: F. gigantica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.