FGIG_04461 protein (Fasciola gigantica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FGIG_04461

Nucleoside diphosphate-linked moiety X motif 19 mitochondrial. (311 aa)

Predicted Functional Partners:

FGIG_09063

0.940

FGIG_05014

0.862

FGIG_03379

0.809

FGIG_05486

0.809

FGIG_09291

0.808

FGIG_09292

0.808

FGIG_01051

0.772

FGIG_09268

0.766

LSM1

0.748

FGIG_01092

0.737

Your Current Organism:

Fasciola gigantica

NCBI taxonomy Id: 46835
Other names: F. gigantica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FGIG_01051	FGIG_03379	A0A504YA35	A0A504YGL1	5'-3' exoribonuclease 1.	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.	0.794
FGIG_01051	FGIG_04461	A0A504YA35	A0A504YBC8	5'-3' exoribonuclease 1.	Nucleoside diphosphate-linked moiety X motif 19 mitochondrial.	0.772
FGIG_01051	FGIG_05486	A0A504YA35	A0A504Z104	5'-3' exoribonuclease 1.	Uncharacterized protein.	0.939
FGIG_01051	FGIG_09291	A0A504YA35	A0A504YHT6	5'-3' exoribonuclease 1.	Uncharacterized protein.	0.984
FGIG_01051	FGIG_09292	A0A504YA35	A0A504YJZ4	5'-3' exoribonuclease 1.	mRNA_decap_C domain-containing protein.	0.984
FGIG_01051	LSM1	A0A504YA35	A0A504Y708	5'-3' exoribonuclease 1.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.973
FGIG_01092	FGIG_04461	A0A504YEK9	A0A504YBC8	Transient receptor potential cation channel subfamily M member 2; Belongs to the transient receptor (TC 1.A.4) family.	Nucleoside diphosphate-linked moiety X motif 19 mitochondrial.	0.737
FGIG_03379	FGIG_01051	A0A504YGL1	A0A504YA35	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.	5'-3' exoribonuclease 1.	0.794
FGIG_03379	FGIG_04461	A0A504YGL1	A0A504YBC8	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.	Nucleoside diphosphate-linked moiety X motif 19 mitochondrial.	0.809
FGIG_03379	FGIG_05486	A0A504YGL1	A0A504Z104	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.	Uncharacterized protein.	0.416
FGIG_03379	FGIG_09291	A0A504YGL1	A0A504YHT6	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.	Uncharacterized protein.	0.951
FGIG_03379	FGIG_09292	A0A504YGL1	A0A504YJZ4	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.	mRNA_decap_C domain-containing protein.	0.951
FGIG_03379	LSM1	A0A504YGL1	A0A504Y708	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.854
FGIG_04461	FGIG_01051	A0A504YBC8	A0A504YA35	Nucleoside diphosphate-linked moiety X motif 19 mitochondrial.	5'-3' exoribonuclease 1.	0.772
FGIG_04461	FGIG_01092	A0A504YBC8	A0A504YEK9	Nucleoside diphosphate-linked moiety X motif 19 mitochondrial.	Transient receptor potential cation channel subfamily M member 2; Belongs to the transient receptor (TC 1.A.4) family.	0.737
FGIG_04461	FGIG_03379	A0A504YBC8	A0A504YGL1	Nucleoside diphosphate-linked moiety X motif 19 mitochondrial.	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.	0.809
FGIG_04461	FGIG_05014	A0A504YBC8	A0A504YFU7	Nucleoside diphosphate-linked moiety X motif 19 mitochondrial.	Adenylate kinase 9.	0.862
FGIG_04461	FGIG_05486	A0A504YBC8	A0A504Z104	Nucleoside diphosphate-linked moiety X motif 19 mitochondrial.	Uncharacterized protein.	0.809
FGIG_04461	FGIG_09063	A0A504YBC8	A0A504YCG3	Nucleoside diphosphate-linked moiety X motif 19 mitochondrial.	Nitrilase and fragile histidine triad fusion protein NitFhit.	0.940
FGIG_04461	FGIG_09268	A0A504YBC8	A0A504YKE7	Nucleoside diphosphate-linked moiety X motif 19 mitochondrial.	Thioredoxin domain-containing protein 3.	0.766