FGIG_06404 protein (Fasciola gigantica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FGIG_06404

Uncharacterized protein. (121 aa)

Predicted Functional Partners:

FGIG_11763

0.940

FGIG_09315

0.811

FGIG_11723

0.756

FGIG_09313

0.707

FGIG_10419

0.700

FGIG_01610

0.684

FGIG_07375

0.662

FGIG_00481

0.660

FGIG_12197

0.660

FGIG_07108

0.646

Your Current Organism:

Fasciola gigantica

NCBI taxonomy Id: 46835
Other names: F. gigantica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FGIG_00481	FGIG_06404	A0A504YMR9	A0A504YK38	Cytochrome P450; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.660
FGIG_00481	FGIG_07108	A0A504YMR9	A0A504Z242	Cytochrome P450; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.498
FGIG_00481	FGIG_07375	A0A504YMR9	A0A504Z3I8	Cytochrome P450; Belongs to the cytochrome P450 family.	Mediator of RNA polymerase II transcription subunit 27-B.	0.942
FGIG_00481	FGIG_09313	A0A504YMR9	A0A504YDH9	Cytochrome P450; Belongs to the cytochrome P450 family.	Ribosomal protein rpl21.	0.519
FGIG_00481	FGIG_09315	A0A504YMR9	A0A504YCJ4	Cytochrome P450; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.865
FGIG_00481	FGIG_10419	A0A504YMR9	A0A504Y314	Cytochrome P450; Belongs to the cytochrome P450 family.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.890
FGIG_00481	FGIG_11723	A0A504YMR9	A0A504Z6K4	Cytochrome P450; Belongs to the cytochrome P450 family.	Small subunit ribosomal protein S27Ae.	0.620
FGIG_00481	FGIG_11763	A0A504YMR9	A0A504YF33	Cytochrome P450; Belongs to the cytochrome P450 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.840
FGIG_01610	FGIG_06404	A0A504YEB1	A0A504YK38	Mitochondrial import receptor subunit TOM40.	Uncharacterized protein.	0.684
FGIG_06404	FGIG_00481	A0A504YK38	A0A504YMR9	Uncharacterized protein.	Cytochrome P450; Belongs to the cytochrome P450 family.	0.660
FGIG_06404	FGIG_01610	A0A504YK38	A0A504YEB1	Uncharacterized protein.	Mitochondrial import receptor subunit TOM40.	0.684
FGIG_06404	FGIG_07108	A0A504YK38	A0A504Z242	Uncharacterized protein.	Uncharacterized protein.	0.646
FGIG_06404	FGIG_07375	A0A504YK38	A0A504Z3I8	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 27-B.	0.662
FGIG_06404	FGIG_09313	A0A504YK38	A0A504YDH9	Uncharacterized protein.	Ribosomal protein rpl21.	0.707
FGIG_06404	FGIG_09315	A0A504YK38	A0A504YCJ4	Uncharacterized protein.	Uncharacterized protein.	0.811
FGIG_06404	FGIG_10419	A0A504YK38	A0A504Y314	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.700
FGIG_06404	FGIG_11723	A0A504YK38	A0A504Z6K4	Uncharacterized protein.	Small subunit ribosomal protein S27Ae.	0.756
FGIG_06404	FGIG_11763	A0A504YK38	A0A504YF33	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.940
FGIG_06404	FGIG_12197	A0A504YK38	A0A504YR54	Uncharacterized protein.	Uncharacterized protein.	0.660
FGIG_07108	FGIG_00481	A0A504Z242	A0A504YMR9	Uncharacterized protein.	Cytochrome P450; Belongs to the cytochrome P450 family.	0.498