STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FGIG_07962Transmembrane emp24 domain trafficking protein 2. (198 aa)    
Predicted Functional Partners:
FGIG_06204
Transmembrane emp24 domain-containing protein bai.
   
 0.998
FGIG_08713
Transmembrane emp24 domain-containing protein eca.
  
 0.994
FGIG_01176
Transmembrane emp24 domain-containing protein 7.
  
0.967
FGIG_04142
GOLD domain-containing protein.
   
 0.964
FGIG_06483
Cargo transport protein erv29.
   
 0.914
FGIG_04428
Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.
    
 0.876
FGIG_07871
Small COPII coat GTPase; Belongs to the small GTPase superfamily. SAR1 family.
   
 0.863
FGIG_11743
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.835
FGIG_11663
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.835
FGIG_01488
Vesicle-trafficking protein SEC22b-B; Belongs to the synaptobrevin family.
   
 0.829
Your Current Organism:
Fasciola gigantica
NCBI taxonomy Id: 46835
Other names: F. gigantica
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