STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FGIG_07675E3 ubiquitin-protein ligase TRIM56. (680 aa)    
Predicted Functional Partners:
FGIG_11723
Small subunit ribosomal protein S27Ae.
    
 0.760
FGIG_07208
AN1-type zinc finger protein 4.
    
 0.704
FGIG_03129
Putative ubiquitin 1.
    
 0.704
FGIG_01036
SUMO-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.655
FGIG_01898
E3 ubiquitin-protein ligase mib1.
    
 0.628
FGIG_05203
Uncharacterized protein.
    
 0.628
FGIG_01896
E3 ubiquitin-protein ligase MIB2.
    
 0.628
FGIG_11763
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.624
FGIG_02292
Fanconi anemia group M protein.
    
 0.613
FGIG_02421
Uncharacterized protein.
    
 0.612
Your Current Organism:
Fasciola gigantica
NCBI taxonomy Id: 46835
Other names: F. gigantica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.