STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FGIG_05474RBR-type E3 ubiquitin transferase. (477 aa)    
Predicted Functional Partners:
FGIG_05147
RBR-type E3 ubiquitin transferase.
    
 0.845
FGIG_11723
Small subunit ribosomal protein S27Ae.
    
 0.820
FGIG_02421
Uncharacterized protein.
    
 0.801
FGIG_07208
AN1-type zinc finger protein 4.
   
 0.771
FGIG_03129
Putative ubiquitin 1.
   
 0.771
FGIG_04100
Putative E3 ubiquitin-protein ligase TRIP12.
   
 
 0.763
FGIG_02598
Neural cell expressed developmentally down-regulated 8.
    
 0.748
FGIG_06690
Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.728
FGIG_12152
Polyubiquitine protein.
    
 0.721
FGIG_11763
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.721
Your Current Organism:
Fasciola gigantica
NCBI taxonomy Id: 46835
Other names: F. gigantica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.