STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FGIG_00465Regulation of nuclear pre-mRNA domain-containing protein 1A. (392 aa)    
Predicted Functional Partners:
FGIG_02991
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.966
FGIG_05261
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.959
FGIG_03291
5'-3' exoribonuclease 2.
    
 
 0.921
FGIG_01209
DNA-directed RNA polymerase II subunit C.
    
 0.819
FGIG_05948
CID domain-containing protein.
    
 0.818
FGIG_08678
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.815
FGIG_03718
RTR1-type domain-containing protein.
   
 0.798
FGIG_09847
DNA-directed RNA polymerase II polypeptide.
    
  0.797
FGIG_12452
Dna directed rna polymerases i ii and iii.
    
  0.782
FGIG_11269
Dna directed rna polymerases i ii and iii.
    
 0.777
Your Current Organism:
Fasciola gigantica
NCBI taxonomy Id: 46835
Other names: F. gigantica
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