STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FGIG_10730Nucleolar protein 56. (584 aa)    
Predicted Functional Partners:
FGIG_07484
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.999
FGIG_03104
U3 small nucleolar RNA-associated protein 15.
   
 0.999
FGIG_01389
Putative ribosome bioproteinsis protein.
  
0.999
FGIG_03046
Dyskeratosis congenita 1 dyskerin.
   
 
 0.999
FGIG_12011
U3 small nucleolar RNA interacting protein 2.
   
 0.998
FGIG_08407
WD_REPEATS_REGION domain-containing protein.
   
 0.998
FGIG_08777
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.998
FGIG_10739
Ribosome biogenesis protein BMS1.
   
 
 0.997
FGIG_12624
rRNA 2'-O-methyltransferase fibrillarin.
   
 0.997
FGIG_12539
rRNA 2'-O-methyltransferase fibrillarin.
   
 0.997
Your Current Organism:
Fasciola gigantica
NCBI taxonomy Id: 46835
Other names: F. gigantica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.