STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000380485_00816Unannotated protein. (200 aa)    
Predicted Functional Partners:
GCA_000380485_00815
Unannotated protein.
       0.678
GCA_000380485_02208
Unannotated protein.
       0.556
GCA_000380485_00814
Unannotated protein.
       0.488
GCA_000380485_03449
Unannotated protein.
   
    0.476
GCA_000380485_00769
Unannotated protein.
   
   0.457
GCA_000380485_00812
Unannotated protein.
 
    0.456
GCA_000380485_01680
Unannotated protein.
 
     0.446
GCA_000380485_00874
Unannotated protein.
   
    0.428
GCA_000380485_01190
Unannotated protein.
   
    0.428
GCA_000380485_01671
Unannotated protein.
   
    0.412
Your Current Organism:
Gordonia kroppenstedtii
NCBI taxonomy Id: 468556
Other names: G. kroppenstedtii DSM 45133, Gordonia kroppenstedtii DSM 45133, Gordonia kroppenstedtii NP8-5, Gordonia sp. NP8-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.