STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000380485_02688Unannotated protein. (353 aa)    
Predicted Functional Partners:
GCA_000380485_01314
Unannotated protein.
   
 
 0.887
GCA_000380485_01670
Unannotated protein.
   
 
 0.887
GCA_000380485_02092
Unannotated protein.
   
 
 0.887
GCA_000380485_00863
Unannotated protein.
    
 0.885
GCA_000380485_03134
Unannotated protein.
  
 
0.837
GCA_000380485_01687
Unannotated protein.
  
 
0.829
GCA_000380485_01031
Unannotated protein.
  
 
0.825
GCA_000380485_02836
Unannotated protein.
  
 
0.825
GCA_000380485_01817
Unannotated protein.
  
 0.810
GCA_000380485_03888
Unannotated protein.
  
  
0.793
Your Current Organism:
Gordonia kroppenstedtii
NCBI taxonomy Id: 468556
Other names: G. kroppenstedtii DSM 45133, Gordonia kroppenstedtii DSM 45133, Gordonia kroppenstedtii NP8-5, Gordonia sp. NP8-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.