STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000380485_03657Unannotated protein. (509 aa)    
Predicted Functional Partners:
GCA_000380485_03475
Unannotated protein.
  
    0.825
GCA_000380485_03656
Unannotated protein.
       0.806
GCA_000380485_03849
Unannotated protein.
    
  0.721
GCA_000380485_03658
Unannotated protein.
     
 0.602
GCA_000380485_01622
Unannotated protein.
    
  0.593
GCA_000380485_01782
Unannotated protein.
 
    0.570
GCA_000380485_02123
Unannotated protein.
       0.556
GCA_000380485_03659
Unannotated protein.
 
     0.525
GCA_000380485_01469
Unannotated protein.
  
     0.473
Your Current Organism:
Gordonia kroppenstedtii
NCBI taxonomy Id: 468556
Other names: G. kroppenstedtii DSM 45133, Gordonia kroppenstedtii DSM 45133, Gordonia kroppenstedtii NP8-5, Gordonia sp. NP8-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.