Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
JP75_08030Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)    
Predicted Functional Partners:
JP75_08040
Gene transfer agent; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.939
JP75_08045
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.826
JP75_08065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.795
JP75_08035
HK97 family phage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.791
JP75_14340
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.719
JP75_21575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.712
JP75_08050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.704
JP75_08060
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.675
JP75_08055
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.645
JP75_14360
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.530
Your Current Organism:
Devosia riboflavina
NCBI taxonomy Id: 46914
Other names: ATCC 9526, CIP 59.10, D. riboflavina, DSM 7230, IFO 13584, JCM 21244, LMG 2277, LMG:2277, NBRC 13584, NRRL B-2463, NRRL B-784, Pseudomonas riboflavina, strain Foster strain 4R3337
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