STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JP75_18660Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)    
Predicted Functional Partners:
JP75_06430
5-hydroxyisourate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
 
  0.783
JP75_02005
Asp/Glu/hydantoin racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.653
JP75_01725
Cellulose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.632
JP75_10840
Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.632
JP75_24215
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.632
JP75_06440
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
0.593
JP75_02050
Allantoate amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.561
JP75_04695
Allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.550
JP75_18665
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.536
JP75_22500
Dolichol monophosphate mannose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.516
Your Current Organism:
Devosia riboflavina
NCBI taxonomy Id: 46914
Other names: ATCC 9526, CIP 59.10, D. riboflavina, DSM 7230, IFO 13584, JCM 21244, LMG 2277, LMG:2277, NBRC 13584, NRRL B-2463, NRRL B-784, Pseudomonas riboflavina, strain Foster strain 4R3337
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