STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_0213ATPase involved in chromosome partitioning-like protein; KEGG: pzu:PHZ_c2999 pilus assembly protein CpaE. (346 aa)    
Predicted Functional Partners:
Tbis_0214
PFAM: type II secretion system protein E; KEGG: pzu:PHZ_c3030 Flp pilus assembly protein ATPase CpaF.
  
 0.973
Tbis_3193
PFAM: SAF domain protein; KEGG: afw:Anae109_3969 SAF domain-containing protein.
 
    0.672
Tbis_2905
TIGRFAM: RNA polymerase sigma-70 factor, sigma- B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; Sigma-70 region 4 type 2; sigma- 70 region 4 domain protein; KEGG: bha:BH0529 RNA polymerase sigma factor SigB.
 
  
 0.556
Tbis_0217
Hypothetical protein.
     
 0.531
Tbis_3565
KEGG: ade:Adeh_0166 integral membrane protein-like.
  
     0.491
Tbis_0215
PFAM: type II secretion system protein; KEGG: reh:H16_B0188 flp pilus assembly protein TadB.
 
  
 0.479
Tbis_0216
PFAM: type II secretion system protein; KEGG: bte:BTH_I2454 type II secretion system protein F.
 
  
 0.466
Tbis_2822
KEGG: ppd:Ppro_2997 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein.
 
  
 0.424
Tbis_1490
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bcb:BCB4264_A5607 sporulation initiation inhibitor protein Soj.
  
  
 0.401
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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