STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_0236PFAM: Catalase domain protein; KEGG: abo:ABO_1845 catalase; Belongs to the catalase family. (482 aa)    
Predicted Functional Partners:
Tbis_0237
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: sfu:Sfum_2668 ferric uptake regulator, Fur family; Belongs to the Fur family.
    
 0.940
Tbis_1137
PFAM: FAD linked oxidase domain protein; KEGG: ank:AnaeK_2952 FAD linked oxidase domain protein.
   
 0.918
Tbis_1138
D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; KEGG: afw:Anae109_2921 D-lactate dehydrogenase (cytochrome).
   
 0.918
Tbis_2143
PFAM: FAD linked oxidase domain protein; KEGG: scl:sce0752 putative glycolate oxidase.
   
 0.918
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
   
 
 0.903
Tbis_1136
PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ank:AnaeK_2951 protein of unknown function DUF224 cysteine-rich region domain protein.
     
  0.900
Tbis_2216
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: lpp:lpp2299 hypothetical protein.
  
 
 0.848
Tbis_0665
KEGG: azc:AZC_1865 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.762
Tbis_3304
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
  
 0.660
Tbis_0415
PFAM: AMP-dependent synthetase and ligase; MaoC domain protein dehydratase; KEGG: rce:RC1_3527 acyl-CoA synthetase, putative.
   
 0.648
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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